SNP Profiles of ICS 40 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AC	CT	CC	GG	GT	AT	AC	CT	AG	GT	AG	TT	AC
1._RUQ_1432	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
2._RUQ_1432	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
3._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
4._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
5._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
6._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
7._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
8._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
9._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
10._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
11._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
12._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
13._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
14._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
15._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
16._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
17._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
18._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
19._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
20._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
21._RUQ_1432	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
22._ICS_40	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
23._GC-01-106-6-03	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
24._ICS_40	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CC	AC	CT	CC	AG	CC	AT	AC	CC	TT	AG	CG
1._RUQ_1432	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
2._RUQ_1432	AG	_	_	_	_	CC	_	CC	_	AA	CC	_	_	_
3._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
4._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
5._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
6._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
7._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
8._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
9._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
10._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
11._ICS_40	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
12._ICS_40	_	_	_	_	_	CC	_	CC	_	_	_	_	_	_
13._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
14._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
15._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
16._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
17._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
18._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
19._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
20._GC-01-106-6-03	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
21._RUQ_1432	AG	_	_	_	_	CC	_	CC	_	AC	GG	_	_	_
22._ICS_40	_	_	_	_	_	AC	_	CC	_	CC	_	_	_	_
23._GC-01-106-6-03	GG	_	_	_	_	AA	_	GG	_	CC	CC	_	_	_
24._ICS_40	_	_	_	_	_	AA	_	GG	_	CC	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CG	CT	GT	AG	CT	CT	CC	AA	TT	CG	GG	CG	AA
1._RUQ_1432	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
2._RUQ_1432	_	_	CT	GT	AG	_	_	CC	_	_	CG	-	_	AA
3._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
4._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
5._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
6._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
7._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
8._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
9._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
10._ICS_40	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
11._ICS_40	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
12._ICS_40	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
13._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
14._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
15._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
16._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
17._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
18._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
19._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
20._GC-01-106-6-03	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
21._RUQ_1432	_	_	_	AC	AG	_	_	CC	_	CC	CG	GG	_	AA
22._ICS_40	AA	_	_	GG	_	_	_	_	_	_	CG	_	_	AA
23._GC-01-106-6-03	AA	_	TT	GT	AG	_	_	AC	_	CC	CC	GG	_	AA
24._ICS_40	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	CT	AT	CC	AA	TT	CT	GT	AC	GT	GT	TT	GG	GG
1._RUQ_1432	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
2._RUQ_1432	-	_	_	_	_	_	_	_	_	GT	_	_	_	_
3._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
4._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
5._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
6._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
7._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
8._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
9._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
10._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
11._ICS_40	_	_	_	_	AA	_	CT	_	_	_	_	_	_	_
12._ICS_40	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
13._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
14._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
15._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
16._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
17._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
18._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
19._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
20._GC-01-106-6-03	CT	_	_	_	AA	_	CT	_	_	_	_	_	_	_
21._RUQ_1432	_	_	_	_	AA	_	_	_	_	AA	_	_	_	_
22._ICS_40	_	_	_	_	GG	_	CC	_	_	GT	_	_	_	_
23._GC-01-106-6-03	CC	_	_	_	GG	_	CC	_	_	GG	_	_	_	_
24._ICS_40	_	_	_	_	GG	_	CC	_	_	GG	_	_	_	_

	57	58	59
_Input profile	CG	CT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1432	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1432	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_40	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_40	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._ICS_40	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-01-106-6-03	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_1432	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._ICS_40	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-01-106-6-03	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._ICS_40	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_40 RUQ_1432

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._ICS_40 RUQ_1432

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_40 RUQ_1432

96.7 %
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._ICS_40

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 4

Dapeng Zhang, 2016

4._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._ICS_40

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 6

Dapeng Zhang, 2016

6._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 11

Dapeng Zhang, 2016

7._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 13

Dapeng Zhang, 2016

8._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 4 > FP

Dapeng Zhang, 2016

9._ICS_40

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 6 > FP

Dapeng Zhang, 2016

10._ICS_40

96.2 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0201 2A

Dapeng Zhang, 2016

11._ICS_40

95.8 %
12 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1603 16

Dapeng Zhang, 2016

12._ICS_40

95.8 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block2

Dapeng Zhang, 2016

13._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

14._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL6

Notes: PL6 FP4

15._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 6, Rep: 3, Tree: PL4

Notes: PL4 FP3

16._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

17._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

18._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

19._ICS_40 GC-01-106-6-03

92.9 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

20._ICS_40 GC-01-106-6-03

92.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

21._ICS_40 RUQ_1432

73.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._ICS_40

61.5 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E287 T4

Dapeng Zhang, 2016

23._ICS_40 GC-01-106-6-03

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

24._ICS_40

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1603 9

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527